SGE links & hints
Jun. 4th, 2006 08:06 pmSGE array job produces too many files and concatenation is slow
http://bioinformatics.org/pipermail/bioclusters/2006-February/002887.html
Resource reservation prevents parallel job starvation
http://gridengine.info/articles/tag/starvation
hint: always use "-V" in qsh and -f in qstat, comment out stty in ~/.profile
( Basic SGE usage )
hint: -hold_jid must be used before job script name or else qsub parser won't assign job dependancy rule to it.
( and that's why )
( that's how qstat -f looks for -hold_jid )
http://bioinformatics.org/pipermail/bioclusters/2006-February/002887.html
Resource reservation prevents parallel job starvation
http://gridengine.info/articles/tag/starvation
hint: always use "-V" in qsh and -f in qstat, comment out stty in ~/.profile
( Basic SGE usage )
hint: -hold_jid must be used before job script name or else qsub parser won't assign job dependancy rule to it.
( and that's why )
( that's how qstat -f looks for -hold_jid )